elektronn3.data package

Subpackages

• elektronn3.data.transforms package
  • Submodules
    • elektronn3.data.transforms.functional module
    • elektronn3.data.transforms.random module
      • HalfNormal
      • Normal
      • RandInt
      • RandomSampler
    • elektronn3.data.transforms.random_blurring module
      • FunctionCallsCounter
      • IncorrectLimits
      • IncorrectThreshold
      • IncorrectType
      • IncorrectValue
      • ScalarScheduler
      • apply_random_blurring()
      • check_random_data_blurring_config()
    • elektronn3.data.transforms.region_generator module
      • Region
      • RegionGenerator
    • elektronn3.data.transforms.transforms module
      • AdditiveGaussianNoise
      • AlbuSeg2d
      • Clahe2d
      • Compose
      • DistanceTransformTarget
      • DropIfTooMuchBG
      • ElasticTransform
      • Identity
      • Lambda
      • Normalize
      • RandomBlurring
      • RandomBrightnessContrast
      • RandomCrop
      • RandomFlip
      • RandomGammaCorrection
      • RandomGaussianBlur
      • RandomGrayAugment
      • RandomRotate2d
      • RandomSlicewiseTransform
      • RemapTargetIDs
      • SmoothOneHotTarget
      • SqueezeTarget

Submodules

• elektronn3.data.cnndata module
  • PatchCreator
    • PatchCreator.check_files()
    • PatchCreator.load_data()
    • PatchCreator.open_files()
    • PatchCreator.set_offset()
    • PatchCreator.warp_cut()
    • PatchCreator.warp_stats
  • Reconstruction2d
  • Segmentation2d
    • Segmentation2d.set_offset()
  • SimpleNeuroData2d
    • SimpleNeuroData2d.close_files()
• elektronn3.data.coord_transforms module
  • WarpingOOBError
  • get_warped_coord_transform()
  • warp_slice()
• elektronn3.data.knossos module
• elektronn3.data.knossos_labels module
• elektronn3.data.sources module
  • DataSource
  • HDF5DataSource
  • slice_3d()
• elektronn3.data.utils module
  • CleanExit
  • DelayedInterrupt
  • GracefulInterrupt
    • GracefulInterrupt.exit_gracefully()
    • GracefulInterrupt.now
  • as_floatX()
  • calculate_class_weights()
  • calculate_means()
  • calculate_nd_slice()
  • calculate_offset()
  • calculate_stds()
  • get_class_counts()
  • get_nonzero_label_ratio()
  • save_to_h5()
  • squash01()